Data and motif summary of RBP GTF2F1

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RBP summary

RBP Name: GTF2F1
RBP description: General Transcription Factor IIF Subunit 1
UniProt ID: P35269
Entrez Gene: 2962
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		X(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 7022313 Peaks: 24369
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 825 (CIMS, deletion) ; 1493 (CIMS, insertion); 19448 (CIMS, substitution); 6552 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.GTF2F1.0
  • GGGTGGT
    		•  311.3250168 1172 0.484848485 (16/33) 0.63583376
    1 K562.GTF2F1.3
  • GGTGGGT
    		•  322.5959391 1243 0.538461538 (14/26) 0.422509491
    2 K562.GTF2F1.2
  • GGGGTTG
    		•  302.185333 1161 0.625 (10/16) 0.227249146
    2 K562.GTF2F1.5
  • GGGTTGG
    		•  355.0628846 1491 0.5 (15/30) 0.572232224
    3 K562.GTF2F1.1
  • GAGGGGG
  • GAGGGGA
  • GAGGGTG
  • GAGGGAG
    		•  466.1321923 3818 0.6 (3/5) 0.5
    4 K562.GTF2F1.4
  • TGGGAGG
  • TGGGAAG
    		•  362.4959216 1789 0.428571429 (6/14) 0.788024902