Data and motif summary of RBP GPKOW

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RBP summary

RBP Name: GPKOW
RBP description: G-Patch Domain And KOW Motifs
UniProt ID: Q92917
Entrez Gene: 27238
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4190616 Peaks: 14377
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 859 (CIMS, deletion) ; 2078 (CIMS, insertion); 10013 (CIMS, substitution); 4511 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.GPKOW.0
  • TCTAGGT
    		•  65.58857685 73 0.25 (1/4) 0.9375
    1 K562.GPKOW.3
  • TTTTAGG
  • TTTCAGG
  • TTTCAGA
    		•  229.6050492 875 0.714285714 (5/7) 0.2265625
    2 K562.GPKOW.2
  • AAAGGTG
    		•  60.06606608 50 0.833333333 (5/6) 0.109375
    3 K562.GPKOW.4
  • AGGTATA
    		•  43.28885438 24 0.411764706 (7/17) 0.833847046
    4 K562.GPKOW.1
  • GCTAATG
    		•  30.78142943 15 0.714285714 (5/7) 0.2265625
    5 K562.GPKOW.5
  • ATTCGAG
    		•  41.47143616 26 0.666666667 (4/6) 0.34375
    5 K562.GPKOW.6
  • AATCGCG
    		•  22.30767662 4 1 (1/1) 0.5
    6 K562.GPKOW.7
  • AGATAAC
    		•  41.47075633 33 0.375 (3/8) 0.85546875