Data and motif summary of RBP GNL3

  1. Home
  2. RBP > GNL3

RBP summary

RBP Name: GNL3
RBP description: G Protein Nucleolar 3
UniProt ID: Q9BVP2
Entrez Gene: 26354
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 2411527 Peaks: 4045
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 406 (CIMS, deletion) ; 1591 (CIMS, insertion); 4969 (CIMS, substitution); 1767 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.GNL3.0
  • CGTTATT
  • CGATATT
    		•  38.75822291 33 1 (2/2) 0.25
    1 K562.GNL3.3
  • GAATAAC
    		•  39.51565736 30 0.666666667 (2/3) 0.5
    2 K562.GNL3.2
  • CGTTAAA
    		•  34.52472461 21 0 (0/1) 1
    3 K562.GNL3.5
  • TAACACC
    		•  37.43840606 23 0.5 (1/2) 0.75
    4 K562.GNL3.8
  • GACTAAA
    		•  35.98596547 28 0.666666667 (2/3) 0.5
    5 K562.GNL3.1
  • CTGAGAC
    		•  42.91902876 35 0.75 (3/4) 0.3125
    6 K562.GNL3.6
  • GATTCTC
    		•  35.59177247 17 1 (1/1) 0.5
    7 K562.GNL3.4
  • ACACTTG
    		•  40.12675807 26 1 (1/1) 0.5
    8 K562.GNL3.7
  • TCACTAT
    		•  38.15657846 23 0.666666667 (2/3) 0.5