Data and motif summary of RBP FXR2

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RBP summary

RBP Name: FXR2
RBP description: FMR1 Autosomal Homolog 2
UniProt ID: P51116
Entrez Gene: 9513
Species: Homo Sapiens
Protein domains: KHx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 3934260 Peaks: 44781
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1097 (CIMS, deletion) ; 1246 (CIMS, insertion); 12587 (CIMS, substitution); 7454 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.FXR2.0
  • ATGACCC
  • ATGGCCC
    		•  119.2804289 362 0.571428571 (4/7) 0.5
    2 K562.FXR2.8
  • GCTATGA
    		•  78.90915708 125 0.571428571 (4/7) 0.5
    3 K562.FXR2.1
  • TTCGCCG
    		•  96.19425607 168 0.375 (3/8) 0.85546875
    4 K562.FXR2.3
  • CGACGCA
    		•  35.12478226 21 0.714285714 (5/7) 0.2265625
    5 K562.FXR2.7
  • ACGGCAC
    		•  46.21067819 44 0.75 (3/4) 0.3125
    6 K562.FXR2.2
  • CGACGTG
    		•  63.86266896 90 0.428571429 (3/7) 0.7734375
    6 K562.FXR2.6
  • CGAGCTG
    		•  70.44327105 115 0.769230769 (10/13) 0.046142578
    7 K562.FXR2.4
  • ACCTGCG
    		•  71.78836465 111 0.555555556 (5/9) 0.5
    8 K562.FXR2.5
  • CTGACGG
    		•  62.19353623 93 0.6 (6/10) 0.376953125