Data and motif summary of RBP FXR1

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RBP summary

RBP Name: FXR1
RBP description: FMR1 Autosomal Homolog 1
UniProt ID: P51114
Entrez Gene: 8087
Species: Homo Sapiens
Protein domains: KHx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 8983247 Peaks: 50907
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 950 (CIMS, deletion) ; 1918 (CIMS, insertion); 23198 (CIMS, substitution); 9668 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.FXR1.0
  • CTATGAC
    		•  94.55900831 184 0.25 (2/8) 0.96484375
    1 K562.FXR1.4
  • ATGACCC
    		•  81.60217922 136 0.25 (1/4) 0.9375
    2 K562.FXR1.6
  • CGATTAC
    		•  51.70214124 50 0.8 (4/5) 0.1875
    3 K562.FXR1.1
  • TGACATG
    		•  110.57699 212 0.5 (1/2) 0.75
    3 K562.FXR1.7
  • CGATGTC
    		•  51.21669862 52 0.388888889 (7/18) 0.881057739
    4 K562.FXR1.8
  • ACAAGAC
    		•  53.72370411 65 0.857142857 (6/7) 0.0625
    5 K562.FXR1.2
  • CGAATTG
    		•  55.42427766 62 0.5 (6/12) 0.612792969
    6 K562.FXR1.3
  • ATTCGAA
  • ATTCGAG
    		•  89.19158943 176 0.769230769 (10/13) 0.046142578
    6 K562.FXR1.5
  • TTCGAAC
    		•  78.31839554 91 0.538461538 (7/13) 0.5