Data and motif summary of RBP FMR1

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RBP summary

RBP Name: FMR1
RBP description: Fragile X Mental Retardation 1
UniProt ID: Q06787
Entrez Gene: 2332
Species: Homo Sapiens
Protein domains: KHx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		x(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 3821647 Peaks: 45063
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1375 (CIMS, deletion) ; 1208 (CIMS, insertion); 11716 (CIMS, substitution); 9779 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.FMR1.0
  • GGCGTAT
    		•  59.8397254 66 0.75 (6/8) 0.14453125
    1 K562.FMR1.3
  • ATGACGC
    		•  76.96148757 111 0.142857143 (1/7) 0.9921875
    1 K562.FMR1.8
  • GACGCCC
    		•  70.04243652 103 0.714285714 (5/7) 0.2265625
    2 K562.FMR1.4
  • TGCCGCC
    		•  105.8930589 237 0.444444444 (4/9) 0.74609375
    3 K562.FMR1.1
  • ACCTGCG
    		•  77.07546767 122 0.375 (3/8) 0.85546875
    4 K562.FMR1.5
  • CCGCATG
    		•  64.6513557 94 0.25 (2/8) 0.96484375
    4 K562.FMR1.6
  • CCGGCAT
    		•  61.18340814 81 0.4 (2/5) 0.8125
    5 K562.FMR1.2
  • CTACCGG
  • CCACCGG
    		•  83.36160196 196 0.125 (1/8) 0.99609375
    6 K562.FMR1.7
  • TGCACCG
    		•  75.90978987 121 0.6 (3/5) 0.5