Data and motif summary of RBP EFTUD2

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RBP summary

RBP Name: EFTUD2
RBP description: Elongation Factor Tu GTP Binding Domain Containing 2
UniProt ID: Q15029
Entrez Gene: 9343
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4763376 Peaks: 19074
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 675 (CIMS, deletion) ; 684 (CIMS, insertion); 10223 (CIMS, substitution); 4438 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.EFTUD2.0
  • TAAGTAT
  • TAAGTAA
    		•  68.97214079 121 0.5 (4/8) 0.63671875
    1 K562.EFTUD2.1
  • GTAAGTA
  • GTAAGTT
    		•  85.27014675 152 0.363636364 (4/11) 0.88671875
    1 K562.EFTUD2.3
  • TGTAAGT
  • AGTAAGT
    		•  88.48896347 159 0.266666667 (4/15) 0.982421875
    2 K562.EFTUD2.5
  • TAAGGTA
    		•  62.9884182 73 0.538461538 (7/13) 0.5
    3 K562.EFTUD2.2
  • GGTAATT
    		•  67.79004999 93 0.375 (3/8) 0.85546875
    4 K562.EFTUD2.4
  • GGTATGT
    		•  78.19347779 103 0.5 (6/12) 0.612792969
    4 K562.EFTUD2.6
  • AGGTATG
    		•  75.46428761 91 0.571428571 (8/14) 0.395263672