Data and motif summary of RBP DDX6

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RBP summary

RBP Name: DDX6
RBP description: DEAD-Box Helicase 6
UniProt ID: P26196
Entrez Gene: 1656
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 5130005 Peaks: 22187
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 630 (CIMS, deletion) ; 896 (CIMS, insertion); 11775 (CIMS, substitution); 5040 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.DDX6.0
  • TTGTACA
    		•  108.9210755 178 0.6 (3/5) 0.5
    2 K562.DDX6.5
  • GCTGTAT
    		•  59.2511622 67 0.571428571 (4/7) 0.5
    3 K562.DDX6.4
  • ATAGTCC
    		•  34.67469333 17 1 (5/5) 0.03125
    4 K562.DDX6.2
  • TGCATGC
    		•  68.84057725 77 0.555555556 (5/9) 0.5
    4 K562.DDX6.6
  • GCATGCA
    		•  47.7009259 38 0.625 (10/16) 0.227249146
    5 K562.DDX6.1
  • CTAATCG
    		•  33.5088184 12 1 (1/1) 0.5
    6 K562.DDX6.3
  • TCGCTAG
    		•  36.73630893 18 1 (1/1) 0.5