Data and motif summary of RBP DDX55

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RBP summary

RBP Name: DDX55
RBP description: DEAD-Box Helicase 55
UniProt ID: Q8NHQ9
Entrez Gene: 57696
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4984269 Peaks: 22297
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 475 (CIMS, deletion) ; 653 (CIMS, insertion); 11314 (CIMS, substitution); 6088 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.DDX55.0
  • CGACGCA
    		•  24.41574906 9 1 (3/3) 0.125
    2 K562.DDX55.7
  • TTGTCGT
    		•  78.13721094 106 0.461538462 (6/13) 0.709472656
    3 K562.DDX55.1
  • TACGCTC
    		•  45.19468706 33 0.333333333 (3/9) 0.91015625
    3 K562.DDX55.4
  • GCGCATA
    		•  30.26373333 12 0.75 (3/4) 0.3125
    4 K562.DDX55.2
  • TCTCACG
    		•  41.57963963 32 0.5 (7/14) 0.604736328
    4 K562.DDX55.9
  • CTCGCAC
    		•  38.64767631 22 0.5 (1/2) 0.75
    5 K562.DDX55.6
  • CTCCCAA
    		•  51.15932851 51 0.444444444 (4/9) 0.74609375
    6 K562.DDX55.5
  • CGATTCC
    		•  36.30152149 26 0.5 (2/4) 0.6875
    7 K562.DDX55.3
  • AACTATC
    		•  50.87368112 51 0.714285714 (5/7) 0.2265625
    8 K562.DDX55.8
  • ACACTAC
    		•  47.13403233 38 0.75 (6/8) 0.14453125