Data and motif summary of RBP DDX3X

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RBP summary

RBP Name: DDX3X
RBP description: DEAD-Box Helicase 3 X-Linked
UniProt ID: O00571
Entrez Gene: 1654
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 5219797 Peaks: 27208
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 500 (CIMS, deletion) ; 1550 (CIMS, insertion); 12406 (CIMS, substitution); 7349 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.DDX3X.0
  • CATGGCG
    		•  92.92063335 131 0.583333333 (7/12) 0.387207031
    1 K562.DDX3X.3
  • ATGGCGG
    		•  96.30658825 164 0.727272727 (8/11) 0.11328125
    1 K562.DDX3X.7
  • TGGCGGC
    		•  118.1274444 283 0.727272727 (8/11) 0.11328125
    2 K562.DDX3X.4
  • CGGCGGT
    		•  88.19738548 154 0.6 (6/10) 0.376953125
    2 K562.DDX3X.8
  • TCCGGCG
    		•  81.34531085 136 0.466666667 (7/15) 0.696380615
    3 K562.DDX3X.2
  • CGCGCTT
    		•  93.41159874 153 0.307692308 (4/13) 0.953857422
    3 K562.DDX3X.6
  • GCGCGAC
    		•  56.83891452 62 0.636363636 (7/11) 0.274414063
    4 K562.DDX3X.5
  • TGACGCG
    		•  55.29484924 53 0.45 (9/20) 0.748277664
    4 K562.DDX3X.9
  • CGCGGCC
    		•  93.83715344 187 0.615384615 (8/13) 0.290527344
    5 K562.DDX3X.1
  • CGGTAGC
    		•  54.20222528 59 0.777777778 (7/9) 0.08984375