Data and motif summary of RBP CPSF6

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RBP summary

RBP Name: CPSF6
RBP description: Cleavage And Polyadenylation Specific Factor 6
UniProt ID: Q16630
Entrez Gene: 11052
Species: Homo Sapiens
Protein domains: RRMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 4733234 Peaks: 15895
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 466 (CIMS, deletion) ; 771 (CIMS, insertion); 10135 (CIMS, substitution); 2444 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.CPSF6.0
  • GAAGAAA
  • GAAGATA
    		•  78.46902409 133 0.642857143 (9/14) 0.211975098
    2 K562.CPSF6.1
  • AAGAAAG
    		•  58.8276114 70 0.5 (2/4) 0.6875
    3 K562.CPSF6.3
  • AAGAGAA
  • AAAAGAA
  • AGAAGAA
    		•  83.10058773 201 0.6 (3/5) 0.5
    4 K562.CPSF6.2
  • AAAGAAG
    		•  63.48915808 91 0.6 (6/10) 0.376953125
    4 K562.CPSF6.4
  • AAGAAGA
  • AAGAACA
  • AGGAAGA
    		•  106.7197595 281 0.363636364 (4/11) 0.88671875