Data and motif summary of RBP AARS

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RBP summary

RBP Name: AARS
RBP description: Alanine--tRNA ligase, cytoplasmic
UniProt ID: P49588
Entrez Gene: 16
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 2085489 Peaks: 3170
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 401 (CIMS, deletion) ; 614 (CIMS, insertion); 4618 (CIMS, substitution); 1085 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.AARS.0
  • TCGCTAG
    		•  21.5494456 3 0.333333333 (1/3) 0.875
    2 K562.AARS.5
  • TGTCGTA
    		•  25.17069204 8 0 (0/2) 1
    3 K562.AARS.1
  • GACATAG
    		•  32.35838555 13 0 (0/1) 1
    3 K562.AARS.2
  • GATCATA
    		•  27.60338755 12 0.75 (3/4) 0.3125
    4 K562.AARS.3
  • GTTACCA
    		•  21.43108748 4 0.5 (1/2) 0.75
    5 K562.AARS.9
  • AGTTCAC
    		•  27.8348212 7 1 (2/2) 0.25
    6 K562.AARS.6
  • GTCCCAA
    		•  24.59389437 5 NA (0/0) NA
    6 K562.AARS.8
  • TGAGACA
    		•  35.09725457 17 NA (0/0) NA
    7 K562.AARS.7
  • GTCAGAC
    		•  26.96179521 9 1 (1/1) 0.5
    8 K562.AARS.4
  • AAGGCCT
    		•  21.47297687 7 0 (0/1) 1