Data and motif summary of RBP XRN2

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RBP summary

RBP Name: XRN2
RBP description: 5'-3' Exoribonuclease 2
UniProt ID: Q9H0D6
Entrez Gene: 22803
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 10624975 Peaks: 39528
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 2057 (CIMS, deletion) ; 3725 (CIMS, insertion); 33580 (CIMS, substitution); 11061 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.XRN2.0
  • CCCGGGG
  • CCCTGGG
    		•  207.3200584 1216 0.446428571 (25/56) 0.825159024
    1 HepG2.XRN2.3
  • GCGGGGG
    		•  280.1276444 1545 0.466666667 (21/45) 0.724257835
    1 HepG2.XRN2.4
  • GGCGGGG
    		•  290.8242366 1704 0.448979592 (22/49) 0.804198545
    2 HepG2.XRN2.1
  • GGGGCGC
  • GGGGGGC
  • GGGGGCC
    		•  321.4291603 3106 0.637931034 (37/58) 0.023970162
    2 HepG2.XRN2.2
  • GGGCCCC
  • GGGTCCC
    		•  187.3835344 1030 0.470588235 (16/34) 0.696204319
    2 HepG2.XRN2.5
  • GGGCGCG
    		•  219.0379631 863 0.466666667 (14/30) 0.707667644