Data and motif summary of RBP XRCC6

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RBP summary

RBP Name: XRCC6
RBP description: X-Ray Repair Cross Complementing 6
UniProt ID: P12956
Entrez Gene: 2547
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 6334097 Peaks: 10830
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 377 (CIMS, deletion) ; 907 (CIMS, insertion); 4475 (CIMS, substitution); 4948 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.XRCC6.0
  • ACTCTAT
    		•  51.19518328 42 0.642857143 (9/14) 0.211975098
    1 HepG2.XRCC6.4
  • ATGAGTG
    		•  60.65012708 78 0.375 (6/16) 0.894943237
    2 HepG2.XRCC6.6
  • TGAGGTC
    		•  88.72465094 142 0.454545455 (5/11) 0.725585938
    3 HepG2.XRCC6.1
  • TACCGTC
    		•  31.61814151 19 0.888888889 (8/9) 0.01953125
    3 HepG2.XRCC6.9
  • ATACCGT
    		•  30.97036625 20 0.5 (5/10) 0.623046875
    4 HepG2.XRCC6.3
  • TATACCG
    		•  30.88888726 15 0.666666667 (2/3) 0.5
    4 HepG2.XRCC6.7
  • CTATACC
    		•  38.04688195 27 0.333333333 (2/6) 0.890625
    5 HepG2.XRCC6.2
  • TGCTCTG
    		•  100.2213721 183 0.5 (11/22) 0.584094048
    5 HepG2.XRCC6.8
  • GTTGCTC
    		•  89.99728499 135 0.263157895 (5/19) 0.990394592
    6 HepG2.XRCC6.5
  • CTGGCAC
    		•  65.45608163 89 0.8 (12/15) 0.017578125