Data and motif summary of RBP U2AF2

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RBP summary

RBP Name: U2AF2
RBP description: U2 Small Nuclear RNA Auxiliary Factor 2
UniProt ID: P26368
Entrez Gene: 11338
Species: Homo Sapiens
Protein domains: RRMx3
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 11890412 Peaks: 78112
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1903 (CIMS, deletion) ; 1640 (CIMS, insertion); 22115 (CIMS, substitution); 27076 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.U2AF2.0
  • TTTCAGG
    		•  218.4174321 784 0.736842105 (14/19) 0.031784058
    1 HepG2.U2AF2.1
  • CTTTCAG
    		•  259.1516285 1103 0.736842105 (14/19) 0.031784058
    2 HepG2.U2AF2.2
  • TCTAGGT
    		•  131.7495309 312 0.5 (16/32) 0.569974967
    2 HepG2.U2AF2.4
  • TTCTAGG
    		•  185.0842632 574 0.733333333 (11/15) 0.059234619
    2 HepG2.U2AF2.9
  • CTTCTAG
    		•  191.7123878 629 0.8 (20/25) 0.002038658
    3 HepG2.U2AF2.6
  • TTCACAG
    		•  198.0583747 598 0.555555556 (20/36) 0.308859659
    4 HepG2.U2AF2.3
  • TTCTTCC
    		•  683.9456444 7663 0.741935484 (23/31) 0.00533692
    4 HepG2.U2AF2.5
  • TTTCTCC
    		•  654.4053304 7095 0.681818182 (15/22) 0.066900253
    4 HepG2.U2AF2.8
  • TTCCTTC
    		•  652.4550848 6560 0.761904762 (16/21) 0.013301849
    5 HepG2.U2AF2.7
  • TCTTCTT
    		•  614.5698473 6443 0.740740741 (20/27) 0.009578645