Data and motif summary of RBP U2AF1

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RBP summary

RBP Name: U2AF1
RBP description: U2 Small Nuclear RNA Auxiliary Factor 1
UniProt ID: Q01081
Entrez Gene: 7307
Species: Homo Sapiens
Protein domains: RRMx1; Znf_CCCHx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 13073571 Peaks: 71524
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 2060 (CIMS, deletion) ; 1715 (CIMS, insertion); 31972 (CIMS, substitution); 21456 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.U2AF1.0
  • TCCACAG
  • CCCACAG
  • TTCACAG
    		•  228.9155894 1072 0.451612903 (14/31) 0.76343517
    1 HepG2.U2AF1.4
  • CCACAGG
    		•  110.7440511 248 0.5 (24/48) 0.557283251
    2 HepG2.U2AF1.2
  • TTCTTCC
    		•  445.919972 3533 0.631578947 (12/19) 0.179641724
    2 HepG2.U2AF1.5
  • TTTCTCC
    		•  461.5590624 3626 0.538461538 (7/13) 0.5
    3 HepG2.U2AF1.1
  • TTTCAGG
  • TTCCAGG
  • TTCTAGG
    		•  307.7470838 2177 0.769230769 (10/13) 0.046142578
    4 HepG2.U2AF1.3
  • TCTAGGT
    		•  143.2433355 422 0.583333333 (21/36) 0.202516123