Data and motif summary of RBP TRA2A

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RBP summary

RBP Name: TRA2A
RBP description: Transformer 2 Alpha Homolog
UniProt ID: Q13595
Entrez Gene: 29896
Species: Homo Sapiens
Protein domains: RRMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 2489358 Peaks: 11809
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 251 (CIMS, deletion) ; 397 (CIMS, insertion); 4987 (CIMS, substitution); 1312 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.TRA2A.0
  • GAAGAAA
    		•  61.58589415 63 0 (0/2) 1
    1 HepG2.TRA2A.1
  • AGAAGAA
    		•  61.24670451 69 0.4 (2/5) 0.8125
    1 HepG2.TRA2A.2
  • AAGAGAA
  • AAGAAAA
  • AAGAAGA
  • AGGAAGA
  • AAGAAAC
  • AAGAAAG
    		•  92.07903362 207 0.75 (6/8) 0.14453125
    2 HepG2.TRA2A.4
  • AAAGAAG
    		•  58.57321967 61 0.5 (3/6) 0.65625
    3 HepG2.TRA2A.3
  • AGACAAG
    		•  36.17583957 23 0.8 (4/5) 0.1875