Data and motif summary of RBP TIA1

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RBP summary

RBP Name: TIA1
RBP description: TIA1 Cytotoxic Granule Associated RNA Binding Protein
UniProt ID: P31483
Entrez Gene: 7072
Species: Homo Sapiens
Protein domains: RRMx3
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		X(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 9513200 Peaks: 50018
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1150 (CIMS, deletion) ; 1381 (CIMS, insertion); 19084 (CIMS, substitution); 20737 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.TIA1.0
  • TCTTTGG
    		•  324.970328 1873 0.657894737 (25/38) 0.036475694
    1 HepG2.TIA1.2
  • CTTTGGT
  • CTTTGGG
  • TTTTGGG
  • CTTTTGG
    		•  472.3793369 5796 0.666666667 (22/33) 0.040071656
    1 HepG2.TIA1.3
  • TTCTTTG
  • TTCTTGG
    		•  479.5843058 4719 0.571428571 (16/28) 0.285794094
    2 HepG2.TIA1.4
  • TTTCTGG
    		•  333.9208873 2079 0.473684211 (9/19) 0.676197052
    3 HepG2.TIA1.1
  • GGTACTT
    		•  139.8109394 341 0.6 (9/15) 0.303619385
    3 HepG2.TIA1.5
  • GGTATGT
    		•  110.2568843 215 0.444444444 (4/9) 0.74609375