Data and motif summary of RBP TBRG4

  1. Home
  2. RBP > TBRG4

RBP summary

RBP Name: TBRG4
RBP description: Transforming Growth Factor Beta Regulator 4
UniProt ID: Q969Z0
Entrez Gene: 9238
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 1083969 Peaks: 2918
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 198 (CIMS, deletion) ; 223 (CIMS, insertion); 2679 (CIMS, substitution); 688 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.TBRG4.0
  • GTATCCA
    		•  26.74929825 9 0.333333333 (2/6) 0.890625
    1 HepG2.TBRG4.8
  • TGGTATC
    		•  22.31315862 6 0 (0/5) 1
    2 HepG2.TBRG4.2
  • GTAGCAA
    		•  22.14499487 5 0.666666667 (4/6) 0.34375
    3 HepG2.TBRG4.3
  • GTATGTC
    		•  22.41795635 5 0 (0/2) 1
    3 HepG2.TBRG4.6
  • TATGTCA
    		•  26.23139873 9 NA (0/0) NA
    4 HepG2.TBRG4.9
  • GCATACA
    		•  28.33510738 8 1 (3/3) 0.125
    5 HepG2.TBRG4.1
  • AGCCTTA
    		•  27.66907977 10 1 (2/2) 0.25
    6 HepG2.TBRG4.4
  • CGCTAAA
    		•  24.390849 5 1 (1/1) 0.5
    7 HepG2.TBRG4.5
  • ATCTGAG
    		•  26.88108179 10 0 (0/1) 1
    8 HepG2.TBRG4.7
  • CAATAGT
    		•  19.31814284 5 0 (0/1) 1