Data and motif summary of RBP SUGP2

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RBP summary

RBP Name: SUGP2
RBP description: SURP And G-Patch Domain Containing 2
UniProt ID: Q8IX01
Entrez Gene: 10147
Species: Homo Sapiens
Protein domains: SURPx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 27454810 Peaks: 134272
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1090 (CIMS, deletion) ; 1824 (CIMS, insertion); 32411 (CIMS, substitution); 38162 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.SUGP2.0
  • GGCTTTC
    		•  194.6284888 673 0.432432432 (48/111) 0.935762284
    2 HepG2.SUGP2.4
  • GCTAGCC
    		•  64.24651567 74 0.333333333 (6/18) 0.951873779
    3 HepG2.SUGP2.6
  • TAGCCTG
    		•  140.7234807 302 0.555555556 (40/72) 0.204789698
    3 HepG2.SUGP2.7
  • AGCCTGT
    		•  117.7605012 263 0.5 (92/184) 0.529370483
    4 HepG2.SUGP2.1
  • GTCTTCT
    		•  296.2799554 1374 0.588785047 (63/107) 0.040676524
    4 HepG2.SUGP2.3
  • TGTCTTC
    		•  312.9937431 1643 0.409836066 (25/61) 0.938134279
    5 HepG2.SUGP2.2
  • TCTGTCG
  • TCTGTGG
    		•  196.0808686 795 0.523364486 (56/107) 0.349587492
    6 HepG2.SUGP2.8
  • GTCTCAG
    		•  125.5968046 284 0.460122699 (75/163) 0.863608042
    7 HepG2.SUGP2.5
  • CTTGGCA
    		•  150.9811149 378 0.55625 (89/160) 0.089388634