Data and motif summary of RBP SUB1

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RBP summary

RBP Name: SUB1
RBP description: SUB1 Homolog, Transcriptional Regulator
UniProt ID: P53999
Entrez Gene: 10923
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 1417658 Peaks: 12109
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 175 (CIMS, deletion) ; 299 (CIMS, insertion); 2410 (CIMS, substitution); 2212 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.SUB1.0
  • TTGTGAA
    		•  77.91521833 123 0.466666667 (7/15) 0.696380615
    1 HepG2.SUB1.5
  • GTTTGTG
    		•  102.2342725 190 0.486486486 (18/37) 0.628585321
    2 HepG2.SUB1.2
  • AATGTGA
  • ATTGTGA
  • TTTGTGA
  • TATGTGA
    		•  110.2016675 367 0.411764706 (7/17) 0.833847046
    3 HepG2.SUB1.4
  • GTCGTTT
    		•  69.53098803 66 0.25 (3/12) 0.980712891
    4 HepG2.SUB1.6
  • TTGGCGT
    		•  47.09103778 37 0.285714286 (4/14) 0.971313477
    5 HepG2.SUB1.1
  • ATGCTAG
    		•  36.25644612 18 0.4 (2/5) 0.8125
    6 HepG2.SUB1.3
  • GGATGTT
    		•  53.62140371 46 0.625 (5/8) 0.36328125