Data and motif summary of RBP SRSF9

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RBP summary

RBP Name: SRSF9
RBP description: Serine And Arginine Rich Splicing Factor 9
UniProt ID: Q13242
Entrez Gene: 8683
Species: Homo Sapiens
Protein domains: RRMx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 5379167 Peaks: 34450
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 795 (CIMS, deletion) ; 859 (CIMS, insertion); 13969 (CIMS, substitution); 6037 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.SRSF9.0
  • CTCTGGA
  • ATCTGGA
  • CACTGGA
    		•  291.5812437 1373 0.563636364 (31/55) 0.209377094
    1 HepG2.SRSF9.1
  • CTGGACT
  • CTGGACC
    		•  248.3499967 1076 0.666666667 (20/30) 0.049368573
    1 HepG2.SRSF9.3
  • TCTGGAC
    		•  235.2455413 805 0.647058824 (22/34) 0.060724742
    2 HepG2.SRSF9.4
  • TGCTGGA
  • TCCTGGA
    		•  251.5286189 1080 0.692307692 (18/26) 0.037759349
    3 HepG2.SRSF9.2
  • TGGATCT
  • TGGACCT
    		•  188.9139162 703 0.708333333 (17/24) 0.031957328