Data and motif summary of RBP SRSF7

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RBP summary

RBP Name: SRSF7
RBP description: Serine And Arginine Rich Splicing Factor 7
UniProt ID: Q16629
Entrez Gene: 6432
Species: Homo Sapiens
Protein domains: RRMx1; Znf_CCHCx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 3803439 Peaks: 19488
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 772 (CIMS, deletion) ; 757 (CIMS, insertion); 7683 (CIMS, substitution); 5653 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.SRSF7.0
  • ATGAGTG
    		•  197.8812495 448 0.2 (1/5) 0.96875
    1 HepG2.SRSF7.4
  • TGAGTGT
    		•  367.7014044 1028 NA (0/0) NA
    2 HepG2.SRSF7.3
  • TGTGTGA
    		•  385.0367795 1270 0 (0/3) 1
    2 HepG2.SRSF7.8
  • GTGTGTG
    		•  406.1531473 1806 NA (0/0) NA
    3 HepG2.SRSF7.6
  • TGAGATC
    		•  98.59851859 184 0.25 (2/8) 0.96484375
    3 HepG2.SRSF7.7
  • TGAGGAT
    		•  107.8001786 200 0.466666667 (7/15) 0.696380615
    4 HepG2.SRSF7.1
  • CGTCTGA
  • CGTCGGA
    		•  199.4195372 601 0.363636364 (4/11) 0.88671875
    5 HepG2.SRSF7.5
  • GAGCGTC
    		•  131.9891032 267 0.666666667 (2/3) 0.5
    6 HepG2.SRSF7.2
  • GTCTTCG
    		•  159.4401716 370 0.6 (6/10) 0.376953125