Data and motif summary of RBP SRSF1

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RBP summary

RBP Name: SRSF1
RBP description: Serine And Arginine Rich Splicing Factor 1
UniProt ID: Q07955
Entrez Gene: 6426
Species: Homo Sapiens
Protein domains: RRMx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		X(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 8265940 Peaks: 71645
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1189 (CIMS, deletion) ; 1061 (CIMS, insertion); 18620 (CIMS, substitution); 10186 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.SRSF1.0
  • CTGGACA
    		•  216.9292033 699 0.683333333 (41/60) 0.003108801
    1 HepG2.SRSF1.2
  • ATGGACC
    		•  184.6473527 543 0.745762712 (44/59) 0.000101861
    1 HepG2.SRSF1.3
  • TGGACCT
  • TGGACCA
    		•  230.1730285 944 0.708333333 (17/24) 0.031957328
    1 HepG2.SRSF1.4
  • CATGGAC
    		•  167.97251 515 0.634146341 (26/41) 0.058637603
    2 HepG2.SRSF1.1
  • ACGTGGA
  • ACCTGGA
  • TCCTGGA
  • TGCTGGA
  • CGCTGGA
    		•  289.4422826 1953 0.644736842 (49/76) 0.007720131