Data and motif summary of RBP SND1

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RBP summary

RBP Name: SND1
RBP description: Staphylococcal Nuclease And Tudor Domain Containing 1
UniProt ID: Q7KZF4
Entrez Gene: 27044
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 5849254 Peaks: 27854
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 2087 (CIMS, deletion) ; 1679 (CIMS, insertion); 14329 (CIMS, substitution); 8067 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.SND1.0
  • TACACGG
    		•  91.83683507 146 0.666666667 (4/6) 0.34375
    1 HepG2.SND1.3
  • ACCGTGT
    		•  60.07046702 75 0.75 (3/4) 0.3125
    1 HepG2.SND1.9
  • TACCGTG
    		•  74.27874843 114 0.4 (2/5) 0.8125
    2 HepG2.SND1.4
  • TTACCGG
    		•  87.42265585 148 0 (0/1) 1
    2 HepG2.SND1.8
  • ACTACCG
    		•  76.61808916 120 0.428571429 (3/7) 0.7734375
    3 HepG2.SND1.1
  • GACGGCT
    		•  64.03853384 85 0.4 (4/10) 0.828125
    4 HepG2.SND1.2
  • GGCGCTA
    		•  54.8248606 58 0.615384615 (8/13) 0.290527344
    4 HepG2.SND1.7
  • AGGCGCT
    		•  62.69223171 88 0.8125 (13/16) 0.010635376
    5 HepG2.SND1.5
  • GGGCTAC
    		•  68.1116081 95 0.333333333 (3/9) 0.91015625
    6 HepG2.SND1.6
  • CGAACGT
    		•  35.20485857 21 0.5 (3/6) 0.65625