Data and motif summary of RBP SMNDC1

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RBP summary

RBP Name: SMNDC1
RBP description: Survival Motor Neuron Domain Containing 1
UniProt ID: O75940
Entrez Gene: 10285
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 3879472 Peaks: 7298
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 517 (CIMS, deletion) ; 1307 (CIMS, insertion); 5119 (CIMS, substitution); 2430 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.SMNDC1.0
  • ACTGACT
    		•  36.66877337 20 0.666666667 (2/3) 0.5
    1 HepG2.SMNDC1.2
  • TACTGAC
  • TATTGAC
    		•  43.82353978 50 0.5 (2/4) 0.6875
    1 HepG2.SMNDC1.7
  • CTACTGA
    		•  43.52417332 38 0.333333333 (1/3) 0.875
    2 HepG2.SMNDC1.1
  • TGACACT
    		•  40.64851312 34 0.625 (5/8) 0.36328125
    2 HepG2.SMNDC1.4
  • GATACTA
    		•  31.16525599 15 0.666666667 (2/3) 0.5
    3 HepG2.SMNDC1.6
  • CTAACCC
    		•  36.82619822 21 0.5 (1/2) 0.75
    4 HepG2.SMNDC1.3
  • ACTCTAT
    		•  42.78119092 32 NA (0/0) NA
    4 HepG2.SMNDC1.8
  • CAATCTA
    		•  31.44719379 16 0.5 (1/2) 0.75
    5 HepG2.SMNDC1.5
  • ACCATAC
    		•  29.28638717 13 0.333333333 (1/3) 0.875