Data and motif summary of RBP SFPQ

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RBP summary

RBP Name: SFPQ
RBP description: Splicing Factor Proline And Glutamine Rich
UniProt ID: P23246
Entrez Gene: 6421
Species: Homo Sapiens
Protein domains: RRMx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 11349706 Peaks: 20794
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 874 (CIMS, deletion) ; 1881 (CIMS, insertion); 24023 (CIMS, substitution); 5084 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.SFPQ.0
  • ATTCCGT
  • GTTCCGT
  • GTACCGT
    		•  215.2809737 707 0.484848485 (32/66) 0.643884559
    1 HepG2.SFPQ.3
  • TATTCCG
    		•  153.6995546 287 0.447368421 (17/38) 0.791153905
    2 HepG2.SFPQ.1
  • TACCGTA
  • TACCGTG
  • TTCCGTG
  • TTCCGTC
    		•  207.4767117 762 0.447154472 (55/123) 0.896676446
    2 HepG2.SFPQ.2
  • CCGTAAT
    		•  89.47333368 111 0.714285714 (10/14) 0.089782715
    3 HepG2.SFPQ.4
  • TGTACCG
    		•  179.6949332 361 0.555555556 (25/45) 0.275742165