Data and motif summary of RBP SF3B4

  1. Home
  2. RBP > SF3B4

RBP summary

RBP Name: SF3B4
RBP description: Splicing Factor 3b Subunit 4
UniProt ID: Q15427
Entrez Gene: 10262
Species: Homo Sapiens
Protein domains: RRMx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 3504272 Peaks: 40520
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1224 (CIMS, deletion) ; 1158 (CIMS, insertion); 9788 (CIMS, substitution); 16281 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.SF3B4.0
  • TCTGACC
  • TCTGACT
    		•  176.3096037 808 0.722222222 (13/18) 0.048126221
    1 HepG2.SF3B4.1
  • CTCTGAC
    		•  151.6704104 498 0.444444444 (8/18) 0.759658813
    2 HepG2.SF3B4.3
  • CTGACTC
    		•  137.3720939 417 0.3 (3/10) 0.9453125
    2 HepG2.SF3B4.4
  • TGACTCT
  • TGTCTCT
    		•  171.6217131 817 0.555555556 (10/18) 0.407264709
    3 HepG2.SF3B4.2
  • TTTCAGG
  • TTGCAGG
    		•  178.5070027 892 0.545454545 (6/11) 0.5
    3 HepG2.SF3B4.5
  • CTTTCAG
  • CTTGCAG
    		•  154.1370792 676 0.444444444 (4/9) 0.74609375