Data and motif summary of RBP SF3A3

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RBP summary

RBP Name: SF3A3
RBP description: Splicing Factor 3a Subunit 3
UniProt ID: Q12874
Entrez Gene: 10946
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 4614086 Peaks: 22778
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 720 (CIMS, deletion) ; 2219 (CIMS, insertion); 10658 (CIMS, substitution); 6968 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.SF3A3.0
  • TTTCAGG
  • TTTCAGA
    		•  118.3438496 409 0.25 (2/8) 0.96484375
    1 HepG2.SF3A3.1
  • CTTTCAG
  • GTTTCAG
    		•  97.68283338 290 0.714285714 (5/7) 0.2265625
    1 HepG2.SF3A3.6
  • TTTGCAG
    		•  104.8669922 238 1 (5/5) 0.03125
    2 HepG2.SF3A3.3
  • TCTAGGT
    		•  58.03403673 78 0.75 (3/4) 0.3125
    3 HepG2.SF3A3.4
  • CTCTGAC
    		•  81.45371518 137 0.666666667 (6/9) 0.25390625
    3 HepG2.SF3A3.5
  • TCTGACC
    		•  72.15044478 117 0.666666667 (8/12) 0.193847656
    4 HepG2.SF3A3.7
  • TGTCTCT
    		•  105.109692 255 0.583333333 (7/12) 0.387207031
    5 HepG2.SF3A3.2
  • CCACAGG
    		•  89.09114787 176 0.428571429 (3/7) 0.7734375