Data and motif summary of RBP RBM22

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RBP summary

RBP Name: RBM22
RBP description: RNA Binding Motif Protein 22
UniProt ID: Q9NW64
Entrez Gene: 55696
Species: Homo Sapiens
Protein domains: RRMx1; Znf_CCHCx1; Znf_CCCHx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 8647295 Peaks: 32947
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1172 (CIMS, deletion) ; 1782 (CIMS, insertion); 21059 (CIMS, substitution); 10869 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.RBM22.0
  • GGTGCCC
    		•  118.1356378 293 0.5 (20/40) 0.562685344
    1 HepG2.RBM22.6
  • GGGGTCC
    		•  136.462472 410 0.444444444 (12/27) 0.778965831
    2 HepG2.RBM22.2
  • TCCCGGG
    		•  138.8206415 350 0.485714286 (17/35) 0.6320606
    2 HepG2.RBM22.3
  • CCCTGGG
  • CCCGGGG
  • CCTGGGG
    		•  202.8057918 1312 0.59375 (19/32) 0.188542794
    3 HepG2.RBM22.7
  • GGCCGGG
    		•  175.8064883 567 0.361702128 (17/47) 0.980006972
    4 HepG2.RBM22.1
  • GTGAGTG
    		•  133.5420275 329 0.571428571 (28/49) 0.195801455
    4 HepG2.RBM22.4
  • TGAGTGC
    		•  106.5855593 229 0.571428571 (16/28) 0.285794094
    4 HepG2.RBM22.5
  • GGTGAGT
    		•  111.8426136 253 0.538461538 (21/39) 0.374629312