Data and motif summary of RBP QKI

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RBP summary

RBP Name: QKI
RBP description: QKI, KH Domain Containing RNA Binding
UniProt ID: Q96PU8
Entrez Gene: 9444
Species: Homo Sapiens
Protein domains: KHx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 12212330 Peaks: 52112
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1542 (CIMS, deletion) ; 3040 (CIMS, insertion); 25408 (CIMS, substitution); 20411 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.QKI.0
  • ACTAACA
  • ACTAACC
  • ACTAACT
    		•  682.6909512 7152 0.846846847 (94/111) 2.13E-14
    1 HepG2.QKI.1
  • TACTAAC
  • AACTAAC
  • CACTAAC
  • GACTAAC
    		•  654.6083087 6641 0.831932773 (99/119) 4.60E-14
    2 HepG2.QKI.2
  • CTAACAA
  • CTAACAT
    		•  596.7005104 5016 0.9125 (73/80) 2.90E-15
    3 HepG2.QKI.3
  • CTACTAA
    		•  556.83121 3662 0.8 (64/80) 2.94E-08