Data and motif summary of RBP PTBP1

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RBP summary

RBP Name: PTBP1
RBP description: Polypyrimidine Tract Binding Protein 1
UniProt ID: P26599
Entrez Gene: 5725
Species: Homo Sapiens
Protein domains: RRMx4
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 10680865 Peaks: 49216
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 526 (CIMS, deletion) ; 792 (CIMS, insertion); 7513 (CIMS, substitution); 12101 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.PTBP1.0
  • TCTTCTT
  • TCTTCTC
    		•  583.1015081 4978 0.909090909 (10/11) 0.005859375
    1 HepG2.PTBP1.1
  • TCTCTCT
    		•  595.0662776 4097 0.6 (3/5) 0.5
    1 HepG2.PTBP1.5
  • GTCTTCT
    		•  256.549647 761 0.692307692 (9/13) 0.133422852
    1 HepG2.PTBP1.6
  • TCTCTTC
    		•  439.2493193 2495 1 (5/5) 0.03125
    2 HepG2.PTBP1.2
  • CTTTCTC
    		•  567.9822573 3863 1 (4/4) 0.0625
    2 HepG2.PTBP1.3
  • CCTTTCT
    		•  553.7677097 3412 0.75 (3/4) 0.3125
    2 HepG2.PTBP1.7
  • TCCTTTC
    		•  550.9862046 3503 0.666666667 (4/6) 0.34375
    3 HepG2.PTBP1.4
  • CTATCCT
  • CTTTCCT
    		•  542.8860327 3564 1 (3/3) 0.125