Data and motif summary of RBP PRPF8

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RBP summary

RBP Name: PRPF8
RBP description: Pre-MRNA Processing Factor 8
UniProt ID: Q6P2Q9
Entrez Gene: 10594
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 10730713 Peaks: 99417
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1842 (CIMS, deletion) ; 1948 (CIMS, insertion); 33546 (CIMS, substitution); 51240 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.PRPF8.0
  • GTAAGTG
  • GTGAGTG
  • GTGAGTA
    		•  1097.786564 15280 0.634615385 (33/52) 0.035197111
    1 HepG2.PRPF8.4
  • TGAGTGC
    		•  789.7024394 5497 0.62962963 (17/27) 0.123894282
    2 HepG2.PRPF8.2
  • AGGTGAG
    		•  1181.863823 16048 0.615384615 (32/52) 0.063173538
    2 HepG2.PRPF8.3
  • GGTGAGT
    		•  1136.507339 14252 0.638297872 (30/47) 0.039470347
    2 HepG2.PRPF8.7
  • CAGGTGA
    		•  993.3903617 10499 0.6 (24/40) 0.134093626
    3 HepG2.PRPF8.5
  • GGTATGT
    		•  541.1017698 3361 0.625 (30/48) 0.055701446
    3 HepG2.PRPF8.6
  • AGGTATG
    		•  726.5201978 5615 0.578947368 (33/57) 0.144621874
    4 HepG2.PRPF8.1
  • TCAAGGT
    		•  617.5952167 5130 0.545454545 (24/44) 0.325793914