Data and motif summary of RBP PCBP2

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RBP summary

RBP Name: PCBP2
RBP description: Poly(RC) Binding Protein 2
UniProt ID: Q15366
Entrez Gene: 5094
Species: Homo Sapiens
Protein domains: KHx3
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 9105929 Peaks: 55884
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 965 (CIMS, deletion) ; 1899 (CIMS, insertion); 18458 (CIMS, substitution); 11099 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.PCBP2.0
  • ATCCCTC
    		•  275.5734843 803 0.7 (7/10) 0.171875
    1 HepG2.PCBP2.5
  • CATCCCT
  • CTTCCCT
    		•  453.5966264 3081 0.8 (8/10) 0.0546875
    2 HepG2.PCBP2.1
  • CCCTTCC
  • CCCATCC
  • CCTATCC
  • CCTACCC
    		•  541.6313622 4574 0.733333333 (22/30) 0.008062401
    2 HepG2.PCBP2.4
  • CCCCTTC
    		•  409.674781 2227 0.722222222 (13/18) 0.048126221
    3 HepG2.PCBP2.2
  • CTTCCTC
    		•  388.741177 2169 0.4 (2/5) 0.8125
    4 HepG2.PCBP2.3
  • CTACCCC
    		•  260.1614998 918 0.771428571 (27/35) 0.000939113