Data and motif summary of RBP NKRF

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RBP summary

RBP Name: NKRF
RBP description: NFKB Repressing Factor
UniProt ID: O15226
Entrez Gene: 55922
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 16836873 Peaks: 49328
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1713 (CIMS, deletion) ; 2730 (CIMS, insertion); 39403 (CIMS, substitution); 17592 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.NKRF.0
  • GGGTTCG
    		•  155.1895902 421 0.339622642 (18/53) 0.993669832
    2 HepG2.NKRF.5
  • GGGTCCA
    		•  138.858043 333 0.368421053 (21/57) 0.983428016
    3 HepG2.NKRF.1
  • CCCGGGG
    		•  154.0340049 539 0.456140351 (26/57) 0.786478572
    3 HepG2.NKRF.2
  • GCGGGGT
    		•  249.4283862 884 0.444444444 (20/45) 0.814350983
    3 HepG2.NKRF.8
  • GGCGGGG
    		•  403.980233 2549 0.5 (17/34) 0.56791688
    4 HepG2.NKRF.6
  • CGTGGGG
    		•  268.1256213 915 0.457142857 (16/35) 0.750220083
    5 HepG2.NKRF.3
  • GGGGGCC
  • GGGGTCC
    		•  293.1784943 2014 0.40625 (26/64) 0.948289061
    5 HepG2.NKRF.4
  • CTGGGGG
    		•  246.8916936 1090 0.58974359 (23/39) 0.168391818
    6 HepG2.NKRF.7
  • GGGGCTG
    		•  300.8775269 1626 0.418918919 (31/74) 0.93491116