Data and motif summary of RBP NCBP2

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RBP summary

RBP Name: NCBP2
RBP description: Nuclear Cap Binding Protein Subunit 2
UniProt ID: P52298
Entrez Gene: 22916
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 8699978 Peaks: 33310
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1093 (CIMS, deletion) ; 1444 (CIMS, insertion); 19625 (CIMS, substitution); 8610 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.NCBP2.0
  • ATGGCGG
    		•  86.58156455 155 0.386363636 (17/44) 0.951929123
    1 HepG2.NCBP2.4
  • CATGGCG
  • GATGGCG
    		•  94.60978186 231 0.31372549 (16/51) 0.997699345
    1 HepG2.NCBP2.7
  • TGGCGGC
  • TAGCGGC
    		•  125.5446704 370 0.375 (15/40) 0.959654766
    2 HepG2.NCBP2.5
  • AGATGGC
    		•  83.3274436 129 0.55 (11/20) 0.411901474
    3 HepG2.NCBP2.1
  • CGGTAGC
    		•  74.4707961 99 0.529411765 (9/17) 0.5
    3 HepG2.NCBP2.2
  • GCGGTAG
    		•  88.04078435 148 0.470588235 (24/51) 0.712075326
    4 HepG2.NCBP2.6
  • CGGCGGT
    		•  103.4790813 180 0.390243902 (16/41) 0.941362397
    5 HepG2.NCBP2.3
  • AGCCGCG
    		•  88.22051799 143 0.388888889 (14/36) 0.933750918