Data and motif summary of RBP LSM11

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RBP summary

RBP Name: LSM11
RBP description: LSM11, U7 Small Nuclear RNA Associated
UniProt ID: P83369
Entrez Gene: 134353
Species: Homo Sapiens
Protein domains: LSmx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 12872605 Peaks: 57853
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1301 (CIMS, deletion) ; 1655 (CIMS, insertion); 34156 (CIMS, substitution); 14663 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.LSM11.0
  • GTAACAC
    		•  69.703418 78 0.526315789 (10/19) 0.5
    1 HepG2.LSM11.8
  • TGTAACA
    		•  115.5141017 238 0.5 (10/20) 0.588098526
    2 HepG2.LSM11.1
  • CTGTAAC
    		•  86.11721269 164 0.611111111 (22/36) 0.121492477
    2 HepG2.LSM11.2
  • GCTGTAA
    		•  68.02607212 103 0.586956522 (27/46) 0.150997807
    3 HepG2.LSM11.3
  • AGCTGTA
  • TGCTGTA
    		•  123.5648241 410 0.564102564 (44/78) 0.154084116
    3 HepG2.LSM11.4
  • GAGCTGT
    		•  121.6063704 297 0.47826087 (22/46) 0.670630961
    4 HepG2.LSM11.6
  • GGACATT
    		•  103.6148632 222 0.4375 (7/16) 0.772750854
    5 HepG2.LSM11.7
  • GTCATCA
    		•  79.84331056 139 0.454545455 (15/33) 0.756574879
    6 HepG2.LSM11.5
  • TATGCGT
    		•  82.98537572 124 0.46875 (15/32) 0.701692552