Data and motif summary of RBP LIN28B

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RBP summary

RBP Name: LIN28B
RBP description: Lin-28 Homolog B
UniProt ID: Q6ZN17
Entrez Gene: 389421
Species: Homo Sapiens
Protein domains: CSDx1; Znf_CCHCx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		4(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 6212942 Peaks: 36484
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 993 (CIMS, deletion) ; 1720 (CIMS, insertion); 13606 (CIMS, substitution); 13378 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.LIN28B.0
  • ATGATGC
  • ATGATAC
    		•  269.0947485 1388 0.588235294 (10/17) 0.314529419
    1 HepG2.LIN28B.2
  • GTATGAT
    		•  229.5788363 831 0.75 (6/8) 0.14453125
    1 HepG2.LIN28B.3
  • TGATACC
    		•  195.8468755 560 0.7 (7/10) 0.171875
    2 HepG2.LIN28B.1
  • TGATGGA
    		•  182.0668756 628 0.5 (12/24) 0.580590129
    3 HepG2.LIN28B.4
  • TGGTGAT
    		•  185.904141 656 0.666666667 (12/18) 0.118942261
    3 HepG2.LIN28B.6
  • GAGTGAT
    		•  186.5262064 574 0.363636364 (4/11) 0.88671875
    3 HepG2.LIN28B.8
  • GTGATTG
    		•  207.9161993 728 0.444444444 (4/9) 0.74609375
    4 HepG2.LIN28B.5
  • GAGATAT
    		•  194.1650427 703 0.5 (3/6) 0.65625
    4 HepG2.LIN28B.7
  • GAGATTC
    		•  187.0708247 585 0.5 (4/8) 0.63671875