Data and motif summary of RBP LARP7

  1. Home
  2. RBP > LARP7

RBP summary

RBP Name: LARP7
RBP description: La Ribonucleoprotein Domain Family Member 7
UniProt ID: Q4G0J3
Entrez Gene: 51574
Species: Homo Sapiens
Protein domains: RRMx2; Lax1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 791381 Peaks: 1886
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 338 (CIMS, deletion) ; 882 (CIMS, insertion); 3186 (CIMS, substitution); 852 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.LARP7.0
  • ACTCTAT
    		•  19.07486987 2 1 (1/1) 0.5
    1 HepG2.LARP7.6
  • AACTCTA
    		•  23.34061245 4 NA (0/0) NA
    2 HepG2.LARP7.3
  • ATGAGTG
    		•  26.23138874 9 0.5 (1/2) 0.75
    3 HepG2.LARP7.8
  • ACAGTTG
    		•  29.38050179 11 0 (0/2) 1
    4 HepG2.LARP7.1
  • ATCTGAG
    		•  29.98951288 11 0.5 (1/2) 0.75
    4 HepG2.LARP7.4
  • AATCTGA
    		•  30.04989723 13 0 (0/1) 1
    5 HepG2.LARP7.2
  • TATACCG
    		•  24.12547309 4 NA (0/0) NA
    5 HepG2.LARP7.5
  • ATACCGT
    		•  26.17393862 9 NA (0/0) NA
    5 HepG2.LARP7.9
  • TACCGTC
    		•  23.50895465 8 NA (0/0) NA
    6 HepG2.LARP7.7
  • GAACAAA
    		•  26.38881662 8 NA (0/0) NA