Data and motif summary of RBP LARP4

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RBP summary

RBP Name: LARP4
RBP description: La Ribonucleoprotein Domain Family Member 4
UniProt ID: Q71RC2
Entrez Gene: 113251
Species: Homo Sapiens
Protein domains: Lax1; RRMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		4(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 13147377 Peaks: 43822
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1245 (CIMS, deletion) ; 1627 (CIMS, insertion); 27210 (CIMS, substitution); 11869 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.LARP4.0
  • GCGTAAA
    		•  36.30351995 22 0.428571429 (9/21) 0.808344841
    2 HepG2.LARP4.1
  • TCTCACG
    		•  67.42024849 78 0.473684211 (9/19) 0.676197052
    3 HepG2.LARP4.5
  • CGACGCA
    		•  36.36221259 17 0.333333333 (6/18) 0.951873779
    4 HepG2.LARP4.8
  • TATGCTC
    		•  94.24180632 169 0.545454545 (12/22) 0.415905952
    5 HepG2.LARP4.6
  • CGATCTT
    		•  81.18984533 117 0.666666667 (18/27) 0.06103906
    6 HepG2.LARP4.2
  • CACCTAT
    		•  81.76416356 144 0.62962963 (17/27) 0.123894282
    6 HepG2.LARP4.7
  • CTGCTAT
    		•  89.43326366 175 0.392857143 (11/28) 0.907533329
    7 HepG2.LARP4.9
  • CATTGTG
    		•  112.9666989 256 0.448275862 (13/29) 0.77087084
    8 HepG2.LARP4.3
  • CCCCAGT
    		•  80.90076944 139 0.576923077 (15/26) 0.278598547
    8 HepG2.LARP4.4
  • TCCCCGT
    		•  96.97948296 181 0.5 (10/20) 0.588098526