Data and motif summary of RBP ILF3

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RBP summary

RBP Name: ILF3
RBP description: Interleukin Enhancer Binding Factor 3
UniProt ID: Q12906
Entrez Gene: 3609
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1 (nucleolus)(HepG2)
1 (nucleolus)(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 15979169 Peaks: 88835
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 718 (CIMS, deletion) ; 1175 (CIMS, insertion); 12322 (CIMS, substitution); 36921 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.ILF3.0
  • TGGCCTG
  • TGGCCTC
  • TGCCCTG
    		•  243.6533502 1746 0.641975309 (52/81) 0.006999737
    1 HepG2.ILF3.2
  • CTGGCCT
  • GTGGCCT
    		•  194.3103935 998 0.626506024 (52/83) 0.013767089
    2 HepG2.ILF3.4
  • GAGCCTC
    		•  150.38922 425 0.423076923 (11/26) 0.836530209
    3 HepG2.ILF3.1
  • CCCTGTG
    		•  138.7826943 412 0.622641509 (33/53) 0.049185324
    3 HepG2.ILF3.5
  • GCCCTGT
    		•  145.6734083 420 0.589285714 (33/56) 0.114402771
    3 HepG2.ILF3.6
  • CCCTGGT
    		•  116.1795441 301 0.53030303 (35/66) 0.356115441
    4 HepG2.ILF3.3
  • TCCCCGT
    		•  127.5189161 303 0.4375 (21/48) 0.843836596