Data and motif summary of RBP IGF2BP1

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RBP summary

RBP Name: IGF2BP1
RBP description: Insulin Like Growth Factor 2 MRNA Binding Protein 1
UniProt ID: Q9NZI8
Entrez Gene: 10642
Species: Homo Sapiens
Protein domains: RRMx2; KHx4
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 6091936 Peaks: 54479
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1768 (CIMS, deletion) ; 1053 (CIMS, insertion); 18260 (CIMS, substitution); 12585 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.IGF2BP1.0
  • CACCACC
  • CACCACA
    		•  140.6814937 536 0.558139535 (24/43) 0.271192006
    1 HepG2.IGF2BP1.1
  • CCACACC
    		•  115.7667276 306 0.428571429 (12/28) 0.827535775
    1 HepG2.IGF2BP1.3
  • ACCACAC
    		•  94.27486327 203 0.681818182 (15/22) 0.066900253
    1 HepG2.IGF2BP1.4
  • CCACCAC
  • TCACCAC
    		•  152.0297845 613 0.416666667 (20/48) 0.903293674
    1 HepG2.IGF2BP1.6
  • ACCCACC
    		•  118.369862 294 0.482758621 (14/29) 0.644464448
    2 HepG2.IGF2BP1.2
  • CAGCCAC
  • CACCCAC
    		•  135.9260083 515 0.575757576 (19/33) 0.243425121
    3 HepG2.IGF2BP1.5
  • ACACCCA
    		•  103.2996266 235 0.65 (13/20) 0.131587982