Data and motif summary of RBP HNRNPU

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RBP summary

RBP Name: HNRNPU
RBP description: Heterogeneous Nuclear Ribonucleoprotein U
UniProt ID: Q00839
Entrez Gene: 3192
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 15570318 Peaks: 38412
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1911 (CIMS, deletion) ; 2187 (CIMS, insertion); 39018 (CIMS, substitution); 13024 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.HNRNPU.0
  • TCAGGGA
    		•  326.4791252 1087 0.510638298 (48/94) 0.458961534
    2 HepG2.HNRNPU.5
  • GGGAGAC
    		•  294.1277198 985 0.5375 (43/80) 0.288215313
    2 HepG2.HNRNPU.6
  • AGGGAGA
    		•  417.3568732 2272 0.462025316 (73/158) 0.849492231
    3 HepG2.HNRNPU.3
  • GGCAGGA
    		•  238.8347402 843 0.486842105 (37/76) 0.634495559
    3 HepG2.HNRNPU.4
  • AGGAAGG
    		•  369.4960744 2117 0.533333333 (32/60) 0.349441714
    4 HepG2.HNRNPU.1
  • TGAGAGG
    		•  209.7617469 839 0.494736842 (47/95) 0.581221965
    4 HepG2.HNRNPU.8
  • CAGAGGG
    		•  162.5524758 471 0.416666667 (15/36) 0.878507523
    5 HepG2.HNRNPU.2
  • AAGGCCT
    		•  85.4300099 145 0.478873239 (34/71) 0.682346179
    5 HepG2.HNRNPU.9
  • AGGCCAG
    		•  158.8690697 436 0.451219512 (37/82) 0.839853318
    6 HepG2.HNRNPU.7
  • AGGCTGA
    		•  152.4604991 297 0.416666667 (5/12) 0.806152344