Data and motif summary of RBP HNRNPM

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RBP summary

RBP Name: HNRNPM
RBP description: Heterogeneous Nuclear Ribonucleoprotein M
UniProt ID: P52272
Entrez Gene: 4670
Species: Homo Sapiens
Protein domains: RRMx3
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		X(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 9126682 Peaks: 81039
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 2694 (CIMS, deletion) ; 3234 (CIMS, insertion); 25337 (CIMS, substitution); 17762 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.HNRNPM.0
  • TGTTGGT
  • TGTTGGC
    		•  319.1259542 2660 0.692307692 (45/65) 0.001313188
    1 HepG2.HNRNPM.2
  • TGTGGTC
    		•  205.7101435 927 0.575757576 (57/99) 0.079534826
    1 HepG2.HNRNPM.6
  • CTGTGGT
    		•  223.1512376 1126 0.622222222 (56/90) 0.013150833
    2 HepG2.HNRNPM.1
  • TGGTTGT
    		•  264.1069813 1468 0.566037736 (30/53) 0.205051358
    2 HepG2.HNRNPM.3
  • GTTTGTG
    		•  324.1598326 2221 0.65 (39/60) 0.013670067
    2 HepG2.HNRNPM.4
  • GTTGTTG
  • GCTGTTG
    		•  314.3914334 2283 0.62962963 (51/81) 0.012827179
    3 HepG2.HNRNPM.5
  • TGCTGTG
    		•  273.3207587 1628 0.571428571 (52/91) 0.104087211
    4 HepG2.HNRNPM.7
  • TTGGCTG
    		•  281.7057683 1535 0.467741935 (29/62) 0.73711332