Data and motif summary of RBP HNRNPK

  1. Home
  2. RBP > HNRNPK

RBP summary

RBP Name: HNRNPK
RBP description: Heterogeneous Nuclear Ribonucleoprotein K
UniProt ID: P61978
Entrez Gene: 3190
Species: Homo Sapiens
Protein domains: KHx3
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 7545301 Peaks: 48550
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 4923 (CIMS, deletion) ; 1454 (CIMS, insertion); 19525 (CIMS, substitution); 7803 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.HNRNPK.0
  • CCCAGTC
    		•  205.9037956 576 0.675675676 (25/37) 0.023515514
    1 HepG2.HNRNPK.7
  • CCCCAGT
    		•  179.6734907 515 0.763157895 (29/38) 0.000829026
    2 HepG2.HNRNPK.2
  • GTCCCCA
    		•  252.6709431 913 0.795918367 (39/49) 1.92E-05
    2 HepG2.HNRNPK.5
  • AGTCCCC
    		•  205.1101863 747 0.833333333 (40/48) 1.65E-06
    3 HepG2.HNRNPK.1
  • CCCATCC
  • CCCGTCC
    		•  309.4749638 1543 0.647058824 (22/34) 0.060724742
    3 HepG2.HNRNPK.3
  • CCATCCC
    		•  295.0511817 1292 0.740740741 (40/54) 0.000267718
    3 HepG2.HNRNPK.6
  • TCCCATC
  • CCCCATC
    		•  327.3288859 1742 0.818181818 (36/44) 1.27E-05
    4 HepG2.HNRNPK.4
  • ATCCCTC
    		•  226.2154179 704 0.739130435 (17/23) 0.017344832