Data and motif summary of RBP HNRNPC

  1. Home
  2. RBP > HNRNPC

RBP summary

RBP Name: HNRNPC
RBP description: Heterogeneous Nuclear Ribonucleoprotein C (C1/C2)
UniProt ID: P07910
Entrez Gene: 3183
Species: Homo Sapiens
Protein domains: RRMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 26903394 Peaks: 178524
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 4398 (CIMS, deletion) ; 5190 (CIMS, insertion); 73718 (CIMS, substitution); 99050 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.HNRNPC.0
  • TTTTGGC
  • TTTTTGC
  • TTTTTGG
  • CTTTTGG
  • CTTTTTG
  • TTTTTTG
  • TTTTTCG
  • TTTTGCC
  • TTTTGGA
    		•  4642.42305 207771 0.742574257 (75/101) 5.58E-07
    2 HepG2.HNRNPC.1
  • TTTGGCT
    		•  720.2093203 7315 0.653465347 (66/101) 0.001326893