Data and motif summary of RBP HNRNPA1

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RBP summary

RBP Name: HNRNPA1
RBP description: Heterogeneous Nuclear Ribonucleoprotein A1
UniProt ID: P09651
Entrez Gene: 3178
Species: Homo Sapiens
Protein domains: RRMx2
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		X(HepG2)
X(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 20812323 Peaks: 77084
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 2646 (CIMS, deletion) ; 2502 (CIMS, insertion); 50753 (CIMS, substitution); 44053 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.HNRNPA1.0
  • TCAGGGA
    		•  1035.263082 9813 0.649635036 (89/137) 0.000290494
    1 HepG2.HNRNPA1.3
  • AGGGAGA
    		•  1356.0406 20140 0.665158371 (147/221) 5.15E-07
    2 HepG2.HNRNPA1.5
  • AGTCAGG
    		•  583.2981898 5268 0.685714286 (48/70) 0.001273782
    3 HepG2.HNRNPA1.1
  • TAGGAAG
  • TAGGGAG
  • TAAGGAG
  • TAGGCAG
  • TAGTCAG
    		•  1522.55037 28648 0.682758621 (99/145) 6.38E-06
    3 HepG2.HNRNPA1.2
  • AGGCAGT
    		•  699.2361483 6362 0.671428571 (94/140) 3.05E-05
    4 HepG2.HNRNPA1.4
  • AGGTAGC
    		•  807.4636381 6958 0.723214286 (81/112) 1.26E-06