Data and motif summary of RBP GTF2F1

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RBP summary

RBP Name: GTF2F1
RBP description: General Transcription Factor IIF Subunit 1
UniProt ID: P35269
Entrez Gene: 2962
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		X(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 9889001 Peaks: 32517
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1029 (CIMS, deletion) ; 2011 (CIMS, insertion); 21680 (CIMS, substitution); 7615 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.GTF2F1.0
  • GCGGGGT
  • GCGGGGG
    		•  304.7433542 1427 0.571428571 (8/14) 0.395263672
    1 HepG2.GTF2F1.2
  • GGCGGGG
    		•  330.1053137 1560 0.5625 (9/16) 0.401809692
    1 HepG2.GTF2F1.6
  • CGGGGTG
    		•  252.986622 740 0.454545455 (5/11) 0.725585938
    2 HepG2.GTF2F1.5
  • GGGGTTG
    		•  273.2943504 953 0.52 (13/25) 0.5
    2 HepG2.GTF2F1.7
  • GGGTGGA
    		•  289.2208508 1136 0.518518519 (14/27) 0.5
    3 HepG2.GTF2F1.1
  • GGGGCGG
    		•  345.2905611 1718 0.413793103 (12/29) 0.867534552
    3 HepG2.GTF2F1.4
  • GGGGGCG
    		•  305.4598846 1487 0.777777778 (7/9) 0.08984375
    4 HepG2.GTF2F1.3
  • GATGGGG
    		•  253.352746 750 0.428571429 (6/14) 0.788024902
    4 HepG2.GTF2F1.8
  • TGGGGGA
    		•  234.9379379 796 0.545454545 (6/11) 0.5