Data and motif summary of RBP GRWD1

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RBP summary

RBP Name: GRWD1
RBP description: Glutamate Rich WD Repeat Containing 1
UniProt ID: Q9BQ67
Entrez Gene: 83743
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
2(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 24472226 Peaks: 151523
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1630 (CIMS, deletion) ; 2997 (CIMS, insertion); 66638 (CIMS, substitution); 44964 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.GRWD1.0
  • CATCGAG
    		•  294.6033668 1345 0.583333333 (28/48) 0.156163404
    2 HepG2.GRWD1.1
  • ATGGACC
    		•  214.7920111 906 0.525 (21/40) 0.437314656
    2 HepG2.GRWD1.2
  • TGGACCA
  • TGGACAA
    		•  313.1100214 2140 0.491803279 (30/61) 0.600923686
    2 HepG2.GRWD1.3
  • CATGGAC
    		•  245.8314876 1168 0.428571429 (27/63) 0.89631605
    3 HepG2.GRWD1.4
  • TGATGGA
    		•  223.6807596 1115 0.537313433 (36/67) 0.312703414
    4 HepG2.GRWD1.5
  • CTGGACA
    		•  281.8161151 1438 0.338461538 (22/65) 0.997040783
    4 HepG2.GRWD1.6
  • GGACATC
    		•  332.5425006 1922 0.512820513 (20/39) 0.5
    5 HepG2.GRWD1.7
  • CAAGCAA
    		•  122.2955552 336 0.615384615 (24/39) 0.099795433
    6 HepG2.GRWD1.8
  • AAGAACC
    		•  169.6122476 566 0.622222222 (28/45) 0.067578225