Data and motif summary of RBP GRSF1

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RBP summary

RBP Name: GRSF1
RBP description: G-Rich RNA Sequence Binding Factor 1
UniProt ID: Q12849
Entrez Gene: 2926
Species: Homo Sapiens
Protein domains: RRMx3
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 5964373 Peaks: 13999
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 642 (CIMS, deletion) ; 1110 (CIMS, insertion); 3335 (CIMS, substitution); 3562 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.GRSF1.0
  • GGGATGT
    		•  96.042263 175 0.45 (9/20) 0.748277664
    1 HepG2.GRSF1.2
  • GGGAACT
    		•  74.35112363 105 0.375 (3/8) 0.85546875
    2 HepG2.GRSF1.1
  • GCTAGCG
    		•  42.04103201 31 0.733333333 (11/15) 0.059234619